How to guide: Getting started
Welcome to CODI! This article explains how to navigate into CODI CODI home page The CODI home page will by default open into the All dataset (public and private) which is represented by a globe on the quick access toolbar on the left side. The second ...
How to guide: Visualization panel
For the moment CODI is only able to display super-resolution microscopy data, meaning images create from localizations of blinking event. For the visualisation or analysis of raw images, such as brightfield, widefield or tracking, please us NimOS or ...
How to guide: Counting tool
Tool view Purpose of tool Counts the number of localisations or ‘bins’ by channel around a set of centre points - currently the centroids of a clustering result. Contents Inputs Results Outputs Inputs The centre points for counting come from a loaded ...
How to guide: Filtering tool
Tool view Purpose of tool Enable user to filter out points based on their properties and save the output for further analysis in workflow. Contents Input parameters Multiple channels Output results Input parameters The points in dSTORM acquisitions ...
How to guide: Annotation tool (ROI)
Purpose of tool Select regions of interest (ROIs) in images. How to draw ROIs To begin drawing an ROI, click on one of the three green button depending on the shape you would like to draw. For the polygon: Click on the image, if possible around the ...