How to guide: Getting started with the beta release
Welcome to CODI! This article explains how to make an account and upload a dataset. CODI home page The CODI home page shows a gallery of datasets. At any point, it is possible to return to this page by clicking on the CODI logo in the top left of the ...
How to guide: Visualization panel
Tool view Note: the visualisation panel is visible in all current CODI widgets on the left hand side of the screen. Purpose of tool Enables the user to customise the main view of the dSTORM acquisition. Contents 2D options 3D options Channel ...
How to guide: Counting tool
Tool view Purpose of tool Counts the number of localisations or ‘bins’ by channel around a set of centre points - currently the centroids of a clustering result. Contents Inputs Results Outputs Inputs The centre points for counting come from a loaded ...
How to guide: Filtering tool
Tool view Purpose of tool Enable user to filter out points based on their properties and save the output for further analysis in workflow. Contents Input parameters Multiple channels Output results Input parameters The points in dSTORM acquisitions ...
How to guide: Annotation tool
Tool view Purpose of tool Select regions of interest (ROIs) in images. Contents How to draw ROIs Output results How to draw ROIs To begin drawing an ROI, click on the Add ROI button in the right-hand panel. Click on the image around the edge of a ...